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Sample GSM841568 Query DataSets for GSM841568
Status Public on Sep 01, 2014
Title WT bone rep 2
Sample type RNA
 
Source name wt bone
Organism Mus musculus
Characteristics strain: C3H/HeJ
age: 120 days
tissue: bone
mouse id: 30137885
genotype/variation: wild type
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 2
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Dec 01, 2011
Last update date Sep 01, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE34079 Genome-wide expression profiling analysis of the Ali35 mutant mouseline carrying a mutation in the Shc2 gene

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 2935.835 0
ILMN_2721178 715.8268 0
ILMN_3033922 385.2763 0
ILMN_3092673 2299.072 0
ILMN_2816356 18.24187 0.01378446
ILMN_2808939 551.5566 0
ILMN_2634564 213.3089 0
ILMN_2737647 1.118556 0.3345865
ILMN_2734484 255.7686 0
ILMN_2952292 76.3517 0.001253133
ILMN_2699078 0.5495197 0.3822055
ILMN_1213681 204.5447 0
ILMN_2735413 -1.161048 0.5225564
ILMN_2735415 4.05181 0.1804511
ILMN_2891688 503.4132 0
ILMN_2637698 935.1495 0
ILMN_2674228 251.186 0
ILMN_2601546 8.314555 0.08145364
ILMN_1230831 -1.537519 0.5651629
ILMN_2848071 10.88492 0.05012531

Total number of rows: 25697

Table truncated, full table size 761 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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