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Sample GSM841579 Query DataSets for GSM841579
Status Public on Sep 01, 2014
Title Ali35 brain mut rep 1
Sample type RNA
 
Source name Ali35 brain
Organism Mus musculus
Characteristics strain: C3H/HeJ
age: 3 days
tissue: brain
mouse id: 380
genotype/variation: Ali35 mutant
Extracted molecule total RNA
Extraction protocol RNA was extracted with Trizol reagent, followed by clean-up with QIAGEN RNeasy midi kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with gel electrophoreses.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol using HiScan
Description replicate 1
Data processing The data were normalised using cubic spline normalisation with Illumina Genomestudio 2011.1
 
Submission date Dec 01, 2011
Last update date Sep 01, 2014
Contact name Martin Irmler
Organization name Helmholtz Zentrum München GmbH
Department Institute of Experimental Genetics
Lab Gene Regulation & Epigenetics
Street address Ingolstaedter Landstrasse 1
City Neuherberg
State/province Bayern
ZIP/Postal code 85764
Country Germany
 
Platform ID GPL6885
Series (1)
GSE34079 Genome-wide expression profiling analysis of the Ali35 mutant mouseline carrying a mutation in the Shc2 gene

Data table header descriptions
ID_REF
VALUE cubic spline normalized
Detection Pval

Data table
ID_REF VALUE Detection Pval
ILMN_2896528 1963.001 0
ILMN_2721178 508.1313 0
ILMN_3033922 361.4526 0
ILMN_3092673 1872.839 0
ILMN_2816356 4.404151 0.09649123
ILMN_2808939 509.5423 0
ILMN_2634564 97.9521 0
ILMN_2737647 6.195667 0.06015038
ILMN_2734484 106.3353 0
ILMN_2952292 14.38417 0.00877193
ILMN_2699078 -2.435331 0.8308271
ILMN_1213681 84.0882 0
ILMN_2735413 -2.183338 0.783208
ILMN_2735415 -0.6062117 0.5162907
ILMN_2891688 149.6934 0
ILMN_2637698 704.881 0
ILMN_2674228 147.1882 0
ILMN_2601546 4.243125 0.1002506
ILMN_1230831 0.3511055 0.3659148
ILMN_2848071 17.11722 0.005012531

Total number of rows: 25697

Table truncated, full table size 746 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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