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Sample GSM8505 Query DataSets for GSM8505
Status Public on Jul 20, 2003
Title SAGE_Hiroshima_GC_W246T
Sample type SAGE
Anchor NlaIII
Tag Count 32174
Tag Length 10
 
Source name primary gastric cancer tissue
Organism Homo sapiens
Extracted molecule total RNA
 
Description Tissue Description: 44 yrs male. Primary gastric adenocarcinoma, T2N2M0, stage IIIA (TNM classification of malignant tumors, 5th ed. New York: Wiley-Liss, Inc, 59-62.), well differentiated, obtained by surgery. Library constructed in the laboratory of Wataru Yasui, M. D., Ph. D. and Naohide Oue, M. D., Ph. D. (Department of Molecular Pathology, Hiroshima University Graduate School of Biomedical Sciences, Hiroshima, Japan).
Sex: male
Organ: stomach
Lab host: DH10B
Vector: pZErO-1
Vector type: plasmid
R. Site 1: Sph1
R. Site 2: Sph1
Library treatment: non-normalized
Tissue supplier: Kazuhiro Yoshida, M.D., Ph.D
Sample type: Bulk
Producer: Department of Molecular Pathology
Sequences generated to date: 2867
Keywords = stomach, advanced gastric cancer, non-normalized, SAGE library method, bulk
 
Submission date Jul 18, 2003
Last update date May 27, 2005
Contact name Wataru Yasui
E-mail(s) wyasui@hiroshima-u.ac.jp
Phone +81-82-257-5145
Fax +81-82-257-5149
Organization name Hiroshima University Graduate School of Biomedical Sciences
Department Molecular Pathology
Street address
City Hiroshima
ZIP/Postal code 734-8551
Country Japan
 
Platform ID GPL4
Series (1)
GSE545 SAGE Hiroshima gastric cancer tissue

Data table header descriptions
TAG Ten base SAGE tag
COUNT Absolute tag count
TPM Tags per million

Data table
TAG COUNT TPM
CCCATCGTCC 504 15664.82253
AAAACATTCT 378 11748.6169
ATGTAAAAAA 371 11531.04992
CACCTAATTG 300 9324.299124
AGCCCTACAA 277 8609.436191
TCCCTATTAA 234 7272.953316
CCCGTCCGGA 230 7148.629328
CTAAGACTTC 217 6744.576366
TTCATACACC 206 6402.685398
AAAAAAAAAA 200 6216.199416
GTTGTGGTTA 158 4910.797538
ATAATTCTTT 152 4724.311556
TTGGTCCTCT 150 4662.149562
TGATTTCACT 131 4071.610617
CTGGGTTAAT 121 3760.800646
GGGCTGGGGT 121 3760.800646
ATTTGAGAAG 119 3698.638652
CAAGCATCCC 116 3605.395661
TAGGTTGTCT 115 3574.314664
CTCCCCCAAA 113 3512.15267

Total number of rows: 12792

Table truncated, full table size 312 Kbytes.




Supplementary data files not provided

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