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Sample GSM85469 Query DataSets for GSM85469
Status Public on Dec 03, 2005
Title Rat brain microvessel SAGE
Sample type SAGE
Anchor NlaIII
Tag Count 101193
Tag Length 10
 
Source name Rat brain microvessels
Organism Rattus norvegicus
Characteristics Rat brain microvessels were isolated from fifty adult male Long-Evans rats (30 days old).
Extracted molecule total RNA
 
Description Total RNA was prepared from the pooled microvessels and from the minced brain sample using RNAwiz. The quantity and quality of the RNA was assessed by UV absorption spectrophotometry and by use of a RNA chip assay (RNA 6000 nanochip with Bioanalyzer, Agilent, Palo Alto, CA).
 
Submission date Nov 29, 2005
Last update date Nov 19, 2008
Contact name Les Drewes
Organization name University of Minnesota Duluth
Street address 1035 University Drive
City Duluth
State/province MN
ZIP/Postal code 55812
Country USA
 
Platform ID GPL23
Series (1)
GSE3696 Rat brain microvessel SAGE

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
ATACTGACAC 1321 13054.26
GTGGCTCACA 751 7421.46
ATAACACATA 748 7391.82
CACGCCTCTC 728 7194.17
TGGATCCTGA 589 5820.56
AATCGGAGGC 527 5207.87
AGCCGTCCCT 471 4654.47
TTGGTGAAGG 403 3982.49
GGCTGCTGGG 357 3527.91
CTAGTCTTTG 346 3419.21
GCTTCATCCA 345 3409.33
CGAACTCTCA 295 2915.22
CTAAGTAAAG 291 2875.69
ACCAGCCAGG 269 2658.29
ACGTCTCAAA 265 2618.76
CCTGCTGTGT 245 2421.12
GTGACCACGG 242 2391.47
GTGCTTTCAA 236 2332.18
GGGATGGCCA 228 2253.12
TGGTTGCTGG 211 2085.12

Total number of rows: 34479

Table truncated, full table size 619 Kbytes.




Supplementary data files not provided

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