GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM85620
Query DataSets for GSM85620
Status
Public on Jul 14, 2006
Title
BE-15
Sample type
SAGE
Anchor
NlaIII
Tag Count
143129
Tag Length
10
Source name
bronchial epithelium
Organism
Homo sapiens
Characteristics
bronchial epithelium
Extracted molecule
polyA RNA
Description
bronchial brushing
Submission date
Nov 30, 2005
Last update date
Nov 19, 2008
Contact name
Kim Marie Lonergan
E-mail(s)
klonergan@bccrc.ca
Phone
604-675-8111
Fax
604-675-8185
Organization name
British Columbia Cancer Research Centre
Department
Cancer Genetics and Developmental Biology
Lab
Dr. Wan L Lam
Street address
675 West 10th Avenue
City
Vancouver
State/province
British Columbia
ZIP/Postal code
V5Z 1L3
Country
Canada
Platform ID
GPL4
Series (2)
GSE3707
Expression profiling of bronchial epithelium
GSE3754
Identification of novel lung genes in bronchial epithelium by serial analysis of gene expression
Data table header descriptions
TAG
10 nucleotide unique SAGE tag sequence
COUNT
raw tag count
TPM
tags per million
Data table
TAG
COUNT
TPM
CTTTGAGTCC
5862
40956.06
ACTTTTTCAA
1585
11073.93
TTCATACACC
1156
8076.63
CACCTAATTG
1075
7510.71
AAAAAAAAAA
815
5694.16
CCCATCGTCC
783
5470.59
GTTGTGGTTA
681
4757.95
CCTATCAGTA
679
4743.97
AGCCCTACAA
677
4730.00
TTCAATAAAA
670
4681.09
TAGGTTGTCT
580
4052.29
ATAATTCTTT
552
3856.66
GTGAAACCCC
538
3758.85
TGTGGGAAAT
495
3458.42
ACTAACACCC
467
3262.79
TTGGTCCTCT
460
3213.88
TAATAAAGGT
403
2815.64
TGTGTTGAGA
403
2815.64
TGATTTCACT
383
2675.91
GTTCACATTA
382
2668.92
Total number of rows:
36802
Table truncated, full table size
662 Kbytes
.
Supplementary data files not provided
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|