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Sample GSM85620 Query DataSets for GSM85620
Status Public on Jul 14, 2006
Title BE-15
Sample type SAGE
Anchor NlaIII
Tag Count 143129
Tag Length 10
 
Source name bronchial epithelium
Organism Homo sapiens
Characteristics bronchial epithelium
Extracted molecule polyA RNA
 
Description bronchial brushing
 
Submission date Nov 30, 2005
Last update date Nov 19, 2008
Contact name Kim Marie Lonergan
E-mail(s) klonergan@bccrc.ca
Phone 604-675-8111
Fax 604-675-8185
Organization name British Columbia Cancer Research Centre
Department Cancer Genetics and Developmental Biology
Lab Dr. Wan L Lam
Street address 675 West 10th Avenue
City Vancouver
State/province British Columbia
ZIP/Postal code V5Z 1L3
Country Canada
 
Platform ID GPL4
Series (2)
GSE3707 Expression profiling of bronchial epithelium
GSE3754 Identification of novel lung genes in bronchial epithelium by serial analysis of gene expression

Data table header descriptions
TAG 10 nucleotide unique SAGE tag sequence
COUNT raw tag count
TPM tags per million

Data table
TAG COUNT TPM
CTTTGAGTCC 5862 40956.06
ACTTTTTCAA 1585 11073.93
TTCATACACC 1156 8076.63
CACCTAATTG 1075 7510.71
AAAAAAAAAA 815 5694.16
CCCATCGTCC 783 5470.59
GTTGTGGTTA 681 4757.95
CCTATCAGTA 679 4743.97
AGCCCTACAA 677 4730.00
TTCAATAAAA 670 4681.09
TAGGTTGTCT 580 4052.29
ATAATTCTTT 552 3856.66
GTGAAACCCC 538 3758.85
TGTGGGAAAT 495 3458.42
ACTAACACCC 467 3262.79
TTGGTCCTCT 460 3213.88
TAATAAAGGT 403 2815.64
TGTGTTGAGA 403 2815.64
TGATTTCACT 383 2675.91
GTTCACATTA 382 2668.92

Total number of rows: 36802

Table truncated, full table size 662 Kbytes.




Supplementary data files not provided

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