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Sample GSM85814 Query DataSets for GSM85814
Status Public on Feb 28, 2006
Title Vd2 PMA rep1
Sample type RNA
 
Source name expanded peripheral blood Vd2 gd T lymphocytes
Organism Homo sapiens
Characteristics healthy male, age 27
Biomaterial provider donor 1
Treatment protocol PMA 20ng/mL, ionomycin 0.5mg/mL, 4hr
Growth protocol 3 week culture with Vd1 mab 0.1mg/mL, pan gd mAb 0.1 mg/mL, and IL-15 10ng/mL
Extracted molecule total RNA
Extraction protocol cells were homogenized in TRIzol reagent, isopropanol precipitated, DNAse treated, then ethanol precipitated
Label biotin
Label protocol 1mg of total RNA was labelled using the Affymetrix One-Cycle labelling procedure
 
Hybridization protocol 15mg of labelled RNA was hybridized to the arrays according to standart Affymetrix procedures, then arrays were washed and stained on the Affymetrix GeneChip Fluidics Station 450 using the Midi_euk2v3 protocol
Scan protocol samples were scanned using the Affymetrix GeneChip Scanner 3000
Description expanded Vd2 cells, PMA treated, donor 1
Data processing Affymetrix GCOS
 
Submission date Dec 02, 2005
Last update date Dec 02, 2005
Contact name Ellen Kress
E-mail(s) ekress@montana.edu
Phone 406-994-6384
Organization name Montana State University
Department Veterinary Molecular Biology
Lab Jutila
Street address PO Box 173610
City Bozeman
State/province MT
ZIP/Postal code 59717-3610
Country USA
 
Platform ID GPL571
Series (1)
GSE3720 Distinct gene expression in human Vd1 and Vd2 gd T cells following non-TCR agonist stimulation

Data table header descriptions
ID_REF Affymetrix probe set
VALUE signal intensity
ABS_CALL P for present, M for marginal, A for absent
DETECTION P-VALUE indicates the significance level of the P,A, or M absolute call

Data table
ID_REF VALUE ABS_CALL DETECTION P-VALUE
AFFX-BioB-5_at 765.9 P 0.000095
AFFX-BioB-M_at 1239.4 P 0.000044
AFFX-BioB-3_at 692.4 P 0.000044
AFFX-BioC-5_at 1897.4 P 0.000044
AFFX-BioC-3_at 2974.1 P 0.000044
AFFX-BioDn-5_at 4805.6 P 0.000044
AFFX-BioDn-3_at 8221.7 P 0.00007
AFFX-CreX-5_at 25316.8 P 0.000044
AFFX-CreX-3_at 27316.7 P 0.000044
AFFX-DapX-5_at 431.4 P 0.00007
AFFX-DapX-M_at 955.8 P 0.000754
AFFX-DapX-3_at 1091 P 0.000052
AFFX-LysX-5_at 61.7 P 0.000296
AFFX-LysX-M_at 67.7 P 0.023929
AFFX-LysX-3_at 184.5 P 0.000126
AFFX-PheX-5_at 102 P 0.000044
AFFX-PheX-M_at 155.4 P 0.000195
AFFX-PheX-3_at 153.2 P 0.000297
AFFX-ThrX-5_at 154.6 P 0.000972
AFFX-ThrX-M_at 176.2 P 0.000044

Total number of rows: 22277

Table truncated, full table size 587 Kbytes.




Supplementary data files not provided

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