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Sample GSM859943 Query DataSets for GSM859943
Status Public on Oct 01, 2012
Title relb-/- BMDCs CpG 8h
Sample type RNA
 
Source name Bone marrow derived dendritic cells
Organism Mus musculus
Characteristics strain: C57Bl6
genotype: relb-/-
agent: CpG
time: 8hr
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from BMDCs with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description BMDCs gene expression in response to CpG or Pam3CSK4
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jan 10, 2012
Last update date Oct 01, 2012
Contact name Vincent Feng-Sheng Shih
Organization name UCSD
Department Chemistry and Biochemistry
Lab UCSD Signaling Systems Laboratory
Street address UCSD m/c 0375, NSB 3318 9500, Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92093-0375
Country USA
 
Platform ID GPL6885
Series (1)
GSE34990 Control of RelB during dendritic cell activation integrates canonical and non-canonical NFkB pathways

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2896528 557.8
ILMN_2721178 108.8
ILMN_3033922 361.8
ILMN_3092673 1261.8
ILMN_2816356 38.3
ILMN_2808939 332
ILMN_2634564 110.3
ILMN_2737647 41.6
ILMN_2734484 202.7
ILMN_2952292 62.2
ILMN_2699078 38.8
ILMN_1213681 74.6
ILMN_2735413 37.2
ILMN_2735415 48
ILMN_2891688 476.4
ILMN_2637698 1046.7
ILMN_2674228 126.3
ILMN_2601546 46.1
ILMN_1230831 38
ILMN_2848071 39.5

Total number of rows: 25697

Table truncated, full table size 454 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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