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Sample GSM859947 Query DataSets for GSM859947
Status Public on Oct 01, 2012
Title relb-/- BMDCs Pam3CSK4 24h
Sample type RNA
 
Source name Bone marrow derived dendritic cells
Organism Mus musculus
Characteristics strain: C57Bl6
genotype: relb-/-
agent: Pam3CSK4
time: 24hr
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from BMDCs with QIAGEN RNeasy mini kit in accordance with the prescribed protocol provided with the kit. Quality control was performed with Agilent Bioanalyser.
Label biotin
Label protocol Biotinylated cRNA were prepared with the Ambion MessageAmp kit for Illumina arrays
 
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description BMDCs gene expression in response to CpG or Pam3CSK4
Data processing The data were normalised using quantile normalisation with IlluminaGUI in R
 
Submission date Jan 10, 2012
Last update date Oct 01, 2012
Contact name Vincent Feng-Sheng Shih
Organization name UCSD
Department Chemistry and Biochemistry
Lab UCSD Signaling Systems Laboratory
Street address UCSD m/c 0375, NSB 3318 9500, Gilman Dr.
City La Jolla
State/province CA
ZIP/Postal code 92093-0375
Country USA
 
Platform ID GPL6885
Series (1)
GSE34990 Control of RelB during dendritic cell activation integrates canonical and non-canonical NFkB pathways

Data table header descriptions
ID_REF
VALUE quantile normalized

Data table
ID_REF VALUE
ILMN_2896528 597.2
ILMN_2721178 107.7
ILMN_3033922 328.3
ILMN_3092673 1222.2
ILMN_2816356 37.3
ILMN_2808939 253.2
ILMN_2634564 123.4
ILMN_2737647 40.3
ILMN_2734484 188.2
ILMN_2952292 70.8
ILMN_2699078 38.5
ILMN_1213681 80.8
ILMN_2735413 34.2
ILMN_2735415 42.8
ILMN_2891688 323.7
ILMN_2637698 1055.5
ILMN_2674228 80
ILMN_2601546 45
ILMN_1230831 39.4
ILMN_2848071 46.8

Total number of rows: 25697

Table truncated, full table size 454 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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