|
Status |
Public on Dec 07, 2012 |
Title |
NOD KI Tconv_MLB 022 |
Sample type |
RNA |
|
|
Source name |
NOD KI Tconv
|
Organism |
Mus musculus |
Characteristics |
tissue: Spleen strain: NOD/LtJ genotype: Foxp3tm2Ayr NOD/LtJ cell type: Tconv
|
Treatment protocol |
Spleens were isolated from 6 week old Tg(Foxp3-EGFP/cre)1aJbs (WT) and Foxp3tm2Ayr NOD/LtJ mice (KI) (No other treatment given)
|
Growth protocol |
Cells were lysed directly after sorting
|
Extracted molecule |
total RNA |
Extraction protocol |
Spleens were dissociated with frosted glass slides into complete RPMI media supplemented with 10% fetal calf serum. T cells were sorted on CD3+CD4+GFP- and mRNA isolated using TRIZOL
|
Label |
Biotin
|
Label protocol |
Biotinylated cRNA were prepared according to the Affymetrix 3' IVT Express protocol
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|
|
Hybridization protocol |
Following fragmentation, 5 microgram of cRNA was hybridized for 16 hr at 45C on each array. GeneChips were washed and stained in the Affymetrix GeneTitan system.
|
Scan protocol |
GeneChips were scanned using the Affymetrix GeneTitan system.
|
Description |
Foxp3gfp Tconv
|
Data processing |
The data were analyzed using Partek Genomics Suite 6.5 and summarized by the RMA method
|
|
|
Submission date |
Jan 18, 2012 |
Last update date |
Dec 07, 2012 |
Contact name |
David Finkelstein |
E-mail(s) |
david.finkelstein@stjude.org
|
Phone |
9014953931
|
Organization name |
St Jude Children's Research Hospital
|
Department |
Computational Biology
|
Street address |
332 N. Lauderdale St.
|
City |
Memphis |
State/province |
TN |
ZIP/Postal code |
38105 |
Country |
USA |
|
|
Platform ID |
GPL11180 |
Series (1) |
GSE35164 |
Loss of Foxp3-driven epigenetic modification leads to regulatory T cell insufficiency |
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