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Sample GSM8647 Query DataSets for GSM8647
Status Public on Jul 30, 2003
Title AtRoot14DayMSTNT
Sample type SAGE
Anchor NlaIII
Tag Count 32203
Tag Length 10
 
Source name Roots
Organism Arabidopsis thaliana
Extracted molecule total RNA
 
Description 14-day old seedlings grown submerged in MS medium and exposed 24 h to 0.0015% (v:v) DMSO and 15 mg/L TNT final concentration.
Keywords = phytoremediation, munitions, TNT, RDX, explosives
 
Submission date Jul 25, 2003
Last update date Nov 19, 2008
Contact name Jeffrey F.D. Dean
E-mail(s) jeffdean@uga.edu
Phone 1-706-542-1710
Fax 1-706-583-0881
Organization name University of Georgia
Department Warnell School of Forest Resources
Street address
City Athens
State/province GA
ZIP/Postal code 30602
Country USA
 
Platform ID GPL25
Series (1)
GSE560 AtSeedlingRootMunitionResponses

Data table header descriptions
TAG
COUNT
TPM tags per million

Data table
TAG COUNT TPM
GTGAGTTTGT 1047 32512.50
CGCCCGCCGC 539 16737.57
TGCAAGTTTG 317 9843.80
ATTTGCCAGA 259 8042.73
TGAGGTGATG 162 5030.59
CGGTGAAAAA 159 4937.43
GCTGTTTTTG 155 4813.22
AAAAAAAAAA 135 4192.16
AGGTCTTGGT 134 4161.10
GACCCGGTGA 112 3477.94
TAAAACTTTG 106 3291.62
AGAGTTTGTA 103 3198.46
TGATGAGTTT 94 2918.98
ATCGGGAGCT 85 2639.51
TCGATGTTGT 75 2328.98
TGTTTGACTT 74 2297.92
TAGCCAATTA 72 2235.82
CCTCTGGTGA 71 2204.76
GCGAGGAAAT 69 2142.66
ACCGTGCGGC 63 1956.34

Total number of rows: 12005

Table truncated, full table size 224 Kbytes.




Supplementary data files not provided

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