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Sample GSM865253 Query DataSets for GSM865253
Status Public on Jan 25, 2012
Title D2_Progenitors_(L-S-K+)_rep3
Sample type RNA
Source name D2_Progenitors_(L-S-K+)
Organism Mus musculus
Characteristics strain: DBA2
tissue: primary bone marrow
cell type: committed LS−K+ cells
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the RNeasy Mini kit (Qiagen) in accordance with the manufacturer’s protocol.
Label biotin
Label protocol Biotinylated cRNA was prepared using the Illumina TotalPrep RNA Amplification Kit (Ambion) according to the manufacturer’s specifications starting with 100 ng total RNA.
Hybridization protocol Standard Illumina hybridization protocol
Scan protocol Standard Illumina scanning protocol
Description D2 Prog 3
Data processing GeneSpring GX 11.0-computed quantile normalized signal intensity. Non-normalized matrix: GenomeStudio-computed raw signal intensity.
Submission date Jan 24, 2012
Last update date Jan 25, 2012
Contact name Leonid Bystrykh
Organization name University Medical Center Groningen
Department European Research Institute for the Biology of Ageing - ERIBA
Lab Ageing Biology and Stem Cells
Street address A. Deusinglaan 1
City Groningen
State/province Groningen
ZIP/Postal code 9713 AV
Country Netherlands
Platform ID GPL6887
Series (2)
GSE34088 The combination of valproic acid and lithium prevents hematopoietic stem/progenitor cell differentiation.
GSE35292 mRNA profiles of four developmentally related hematopoietic cell types (LSK, L-S-K+, Gr1+ and Ter119+) isolated from the BM of B6 and D2 mice

Data table header descriptions
VALUE log2 Quantile normalized

Data table
ID_REF VALUE DetectionPvalue DetectionCalls
ILMN_1243094 6.363615 0.30556 A
ILMN_1240307 6.4272394 0.69658 M
ILMN_2454720 6.303456 0.0641 A
ILMN_1238674 6.354108 0.25107 A
ILMN_3062534 6.451487 0.7938 M
ILMN_3140158 7.7568417 1 P
ILMN_2935307 6.3449583 0.20833 A
ILMN_1251139 6.5465193 0.94338 P
ILMN_2429159 6.471174 0.85363 P
ILMN_2754227 6.401414 0.55021 A
ILMN_1225693 6.346789 0.21474 A
ILMN_1234015 6.3762927 0.38675 A
ILMN_2603725 10.251672 1 P
ILMN_2664884 6.401414 0.54915 A
ILMN_1229397 6.406677 0.56944 A
ILMN_1225873 6.363615 0.31303 A
ILMN_3003575 6.3449583 0.20406 A
ILMN_1257702 11.235549 1 P
ILMN_2899591 7.4677186 1 P
ILMN_2658355 6.3995132 0.53846 A

Total number of rows: 45281

Table truncated, full table size 1389 Kbytes.

Supplementary data files not provided
Raw data are available on Series record
Processed data included within Sample table

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