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Sample GSM870944 Query DataSets for GSM870944
Status Public on Nov 12, 2013
Title child-67
Sample type RNA
Source name peripheral blood sample
Organism Homo sapiens
Characteristics age (yr): 13.3
gender: M
disease status: non-asthmatic
Growth protocol Peripheral blood samples were collected in PAXgene blood RNA tubes (Qiagen, Valencia, CA, USA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the Qiagen PAXgene Blood RNA Kit
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol Hybridization protocol following fragmentation. cRNA was hybridized on to the Affymetrix U133 2.0 Plus Human Array
Scan protocol GeneChips were scanned using the Affymetrix Scanner
Description Gene expression data from peripheral blood
Data processing The normalization was a quantile normalization per the canonical Robust Multi-Chip method. Each sample was used as a stand alone expression value, but those values were normalized to provide a common distribution using the quantile normalization (at the probe level) and summarized using the median polish algorithm (to produce a single log2 transformed value per probe set).
Submission date Feb 06, 2012
Last update date Nov 13, 2013
Contact name Rebecca Catherine Fry
Organization name UNC-Chapel Hill
Department Environmental Sciences and Engineering
Street address 1213 MHRC
City Chapel Hill
ZIP/Postal code 27599
Country USA
Platform ID GPL570
Series (1)
GSE35571 Gene expression data from 131 human subjects in Detroit, Michigan

Data table header descriptions
VALUE Robust Multi-Chip Analysis signal intensity (log2)

Data table
1007_s_at 7.229310557
1053_at 6.79955973
117_at 9.905877058
121_at 7.268696815
1255_g_at 2.550176383
1294_at 8.890947252
1316_at 5.052383252
1320_at 3.515995299
1405_i_at 11.04276167
1431_at 3.656750234
1438_at 4.573824314
1487_at 8.3305348
1494_f_at 5.272699507
1552256_a_at 7.455819077
1552257_a_at 7.869028768
1552258_at 5.082258211
1552261_at 3.585033567
1552263_at 9.0028276
1552264_a_at 9.771181725
1552266_at 2.453292611

Total number of rows: 54662

Table truncated, full table size 1211 Kbytes.

Supplementary file Size Download File type/resource
GSM870944.CEL.gz 4.8 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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