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Sample GSM870978 Query DataSets for GSM870978
Status Public on Nov 12, 2013
Title child-111
Sample type RNA
Source name peripheral blood sample
Organism Homo sapiens
Characteristics age (yr): 12.7
gender: F
disease status: non-asthmatic
Growth protocol Peripheral blood samples were collected in PAXgene blood RNA tubes (Qiagen, Valencia, CA, USA).
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the Qiagen PAXgene Blood RNA Kit
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol.
Hybridization protocol Hybridization protocol following fragmentation. cRNA was hybridized on to the Affymetrix U133 2.0 Plus Human Array
Scan protocol GeneChips were scanned using the Affymetrix Scanner
Description Gene expression data from peripheral blood
Data processing The normalization was a quantile normalization per the canonical Robust Multi-Chip method. Each sample was used as a stand alone expression value, but those values were normalized to provide a common distribution using the quantile normalization (at the probe level) and summarized using the median polish algorithm (to produce a single log2 transformed value per probe set).
Submission date Feb 06, 2012
Last update date Nov 13, 2013
Contact name Rebecca Catherine Fry
Organization name UNC-Chapel Hill
Department Environmental Sciences and Engineering
Street address 1213 MHRC
City Chapel Hill
ZIP/Postal code 27599
Country USA
Platform ID GPL570
Series (1)
GSE35571 Gene expression data from 131 human subjects in Detroit, Michigan

Data table header descriptions
VALUE Robust Multi-Chip Analysis signal intensity (log2)

Data table
1007_s_at 7.238768639
1053_at 7.039023201
117_at 9.588903635
121_at 7.4176924
1255_g_at 2.773724625
1294_at 8.719908324
1316_at 4.635668671
1320_at 3.594107362
1405_i_at 10.7695992
1431_at 3.479189393
1438_at 4.623181962
1487_at 7.970199761
1494_f_at 5.017626857
1552256_a_at 6.785853562
1552257_a_at 7.6235662
1552258_at 4.349871577
1552261_at 3.341978396
1552263_at 8.665377534
1552264_a_at 9.364977658
1552266_at 2.589406721

Total number of rows: 54662

Table truncated, full table size 1211 Kbytes.

Supplementary file Size Download File type/resource
GSM870978.CEL.gz 4.9 Mb (ftp)(http) CEL
Raw data provided as supplementary file
Processed data included within Sample table

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