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Sample GSM872020 Query DataSets for GSM872020
Status Public on Mar 14, 2012
Title ECC_F2A_24_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 13.6651114672082 18007.17 6761.54010541881 0 27
ILMN_2956159 13.5106503771691 17638.42 3377.71216917743 0 28
ILMN_2704576 14.4496762423788 20989.28 5040.1128 0 36
ILMN_3135931 13.8206889427679 18454.97 5846.74698204293 0 39
ILMN_2516699 14.2617429273087 19454.15 5553.79820729115 0 40
ILMN_2964873 13.8947964597709 18588.79 3592.91216131358 0 35
ILMN_1377920 14.1316861494688 19282.78 4239.82446020189 0 105
ILMN_2747959 13.1257171971427 15862.88 4205.61566172225 0 46
ILMN_2666018 14.1981373709814 19420.14 1657.68468450516 0 42
ILMN_2851231 13.7224347345669 18370.77 4785.13625697327 0 51
ILMN_2948086 13.9370770625561 18632.58 5713.57517201538 0 46
ILMN_2675747 13.4462459706025 17314.94 5521.85377804314 0 57
ILMN_1258988 10.5610126778761 4822.493 1227.95843890547 0 44
ILMN_2876066 13.2028667700533 16194.71 3337.54940033103 0 34
ILMN_2588052 14.0303542221077 19138.75 2896.51087254093 0 86
ILMN_2658908 11.9908324150441 11139.52 2997.2355 0 25
ILMN_2876071 12.3596520368734 13205.27 2392.36108111895 0 29
ILMN_2696977 12.8490849475816 15052.3 3455.00671916944 0 38
ILMN_2740432 12.684270796525 14627.82 4479.51238120902 0 41
ILMN_3126986 13.5369951607971 17709.75 3519.03183005035 0 42

Total number of rows: 25697

Table truncated, full table size 1653 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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