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Sample GSM872022 Query DataSets for GSM872022
Status Public on Mar 14, 2012
Title ECC_F2A_3_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 13.4881878545018 15368.18 3713.09794377781 0 47
ILMN_2956159 13.9824632190025 19350.05 3915.22083178782 0 32
ILMN_2704576 13.1630855393705 12610.63 3448.95068572921 0 37
ILMN_3135931 14.1981373709814 21037.01 4950.89331424453 0 45
ILMN_2516699 14.0303542221077 19912.35 4738.62167996326 0 24
ILMN_2964873 14.1316861494688 20812.91 4745.68404936809 0 34
ILMN_1377920 14.2617429273087 21414.44 4730.63188329475 0 105
ILMN_2747959 13.8206889427679 18054.29 5384.04975218167 0 30
ILMN_2666018 13.5369951607971 15968.82 3699.72137843952 0 45
ILMN_2851231 13.6651114672082 16794.24 4799.95272491891 0 44
ILMN_2948086 13.5106503771691 15723.08 3494.76584263495 0 48
ILMN_2675747 13.6361716421311 16586.31 3961.18369149861 0 55
ILMN_1258988 12.7481092613436 10560.37 2658.09870003881 0 48
ILMN_2876066 14.4496762423788 22169.54 7256.70870405241 0 53
ILMN_2588052 14.3217164163927 22010.89 5817.40006605019 0 80
ILMN_2658908 13.1807706602325 12682.17 3447.90688367901 0 37
ILMN_2876071 13.7224347345669 17507.58 6288.63663425962 0 45
ILMN_2696977 13.7532623321719 17662.56 4547.10806711319 0 34
ILMN_2740432 13.5619268851235 16009.75 4475.98425684429 0 43
ILMN_3126986 13.6909941243974 16825.07 2738.32227300188 0 42

Total number of rows: 25697

Table truncated, full table size 1651 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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