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Sample GSM872029 Query DataSets for GSM872029
Status Public on Mar 14, 2012
Title ECC_F2A_14_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 13.7837814497459 21305 6007.0913833654 0 44
ILMN_2956159 14.1981373709814 24566.67 5996.48678818806 0 34
ILMN_2704576 14.0772940094986 23597.8 5966.35700893808 0 50
ILMN_3135931 13.9370770625561 22109.72 6545.0021 0 49
ILMN_2516699 14.0303542221077 23116.73 5976.0906 0 36
ILMN_2964873 14.2617429273087 25153.02 7390.7468650562 0 42
ILMN_1377920 14.1316861494688 23843.72 7088.84403517626 0 112
ILMN_2747959 13.3818472839267 17301.36 4394.74953809016 0 32
ILMN_2666018 13.61103989448 20349.6 3431.0456419399 0 38
ILMN_2851231 13.6651114672082 20658.68 6019.44163632209 0 32
ILMN_2948086 13.1257171971427 15750.5 3828.59785981331 0 43
ILMN_2675747 13.424341814088 17888.69 5004.8025987096 0 59
ILMN_1258988 12.0803018102721 9511.381 2618.52375718521 0 53
ILMN_2876066 13.8947964597709 22022.67 7236.09262455954 0 45
ILMN_2588052 14.4496762423788 25843.72 7219.58540891606 0 72
ILMN_2658908 12.4374580458286 11582.41 3035.21535415216 0 41
ILMN_2876071 13.5369951607971 18508.55 6904.88608613071 0 59
ILMN_2696977 13.4669907339079 18105.32 5141.43127909559 0 53
ILMN_2740432 12.8790143649067 14564.82 4495.80384961358 0 37
ILMN_3126986 13.2226307021588 16280.97 4961.60036723801 0 40

Total number of rows: 25697

Table truncated, full table size 1651 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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