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Sample GSM872038 Query DataSets for GSM872038
Status Public on Mar 14, 2012
Title ECC_F2A_30_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 13.8947964597709 17113.09 4319.5420890316 0 39
ILMN_2956159 13.7837814497459 14670.53 3873.01349114972 0 39
ILMN_2704576 13.3403776106269 11431.59 3093.09719294431 0 50
ILMN_3135931 13.9824632190025 17761.65 3831.83788145676 0 47
ILMN_2516699 13.6361716421311 13859.85 4463.0934 0 36
ILMN_2964873 14.1316861494688 18832.35 4734.38522351894 0 42
ILMN_1377920 14.3217164163927 20712.79 5566.90630213119 0 132
ILMN_2747959 12.819512360874 8236.782 2045.3226 0 36
ILMN_2666018 13.61103989448 13838.86 4479.41825528273 0 41
ILMN_2851231 13.2799227727492 10721.32 1795.52111659192 0 27
ILMN_2948086 13.1257171971427 9725.304 2803.40251916936 0 42
ILMN_2675747 13.4462459706025 12669.88 2850.3685 0 49
ILMN_1258988 9.67448339943837 797.5087 229.393524625159 0 46
ILMN_2876066 14.2617429273087 19601.95 4008.59864269295 0 39
ILMN_2588052 14.4496762423788 24118.84 6339.87084296926 0 87
ILMN_2658908 11.8956897562477 4035.906 929.952482574782 0 28
ILMN_2876071 14.1981373709814 18997.22 5396.21815523854 0 37
ILMN_2696977 13.4881878545018 12896.43 3483.87892287232 0 39
ILMN_2740432 13.2419685347263 10624.72 3165.42096458308 0 41
ILMN_3126986 13.7532623321719 14040.12 3757.25546625339 0 51

Total number of rows: 25697

Table truncated, full table size 1651 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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