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Sample GSM872041 Query DataSets for GSM872041
Status Public on Mar 14, 2012
Title ECC_F2A_38_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 9.38887879224098 828.8584 246.005411443727 0 34
ILMN_2956159 14.0772940094986 18366.54 5874.06208969093 0 38
ILMN_2704576 8.64965167135049 490.0698 177.944225580705 0 43
ILMN_3135931 13.8206889427679 16066.1 4428.73817151982 0 38
ILMN_2516699 13.7837814497459 15613.96 4154.95675331904 0 27
ILMN_2964873 14.1981373709814 20951.12 5537.14375576611 0 40
ILMN_1377920 14.1316861494688 19886.34 6167.53740271567 0 122
ILMN_2747959 13.8947964597709 17085.8 4758.24100427364 0 34
ILMN_2666018 13.7532623321719 15328.37 4645.95861360265 0 31
ILMN_2851231 13.5369951607971 12451.63 3749.89625759507 0 38
ILMN_2948086 13.2028667700533 11033.8 3068.22548552091 0 43
ILMN_2675747 13.61103989448 12819.99 3277.35319854687 0 35
ILMN_1258988 11.6669139343008 3875.695 1419.37961171032 0 54
ILMN_2876066 14.4496762423788 21834.09 5554.41982123376 0 47
ILMN_2588052 14.2617429273087 21442.32 5951.45293183131 0 94
ILMN_2658908 10.9164033252547 2297.346 768.798717945861 0 30
ILMN_2876071 13.9824632190025 17689.08 6057.27 0 36
ILMN_2696977 13.6361716421311 13412.22 4278.86215916755 0 41
ILMN_2740432 13.5619268851235 12465.17 3800.14759953806 0 51
ILMN_3126986 13.6651114672082 13715.75 4226.26177418189 0 41

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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