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Sample GSM872045 Query DataSets for GSM872045
Status Public on Mar 14, 2012
Title ECC_F2A_44_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 14.0303542221077 16411.05 4778.12194597075 0 51
ILMN_2956159 13.6361716421311 14137.98 3238.7957401685 0 35
ILMN_2704576 13.6909941243974 14503.47 4171.55315254019 0 44
ILMN_3135931 13.61103989448 13493.79 3110.41734785655 0 47
ILMN_2516699 13.9370770625561 16135.78 3149.86021228427 0 38
ILMN_2964873 14.3217164163927 19363.63 4528.49500100053 0 41
ILMN_1377920 14.1316861494688 16863.55 4841.914567243 0 130
ILMN_2747959 13.1630855393705 10044.23 2468.76944454386 0 35
ILMN_2666018 14.2617429273087 17340.01 2889.6488161526 0 47
ILMN_2851231 13.4669907339079 11608.14 3386.83420843281 0 52
ILMN_2948086 12.972348249064 9122.735 2579.71769741221 0 47
ILMN_2675747 13.2419685347263 10430.6 2944.65785996526 0 59
ILMN_1258988 11.239479555367 2870.229 675.318455662823 0 42
ILMN_2876066 13.9824632190025 16142.97 3313.48225316508 0 38
ILMN_2588052 14.4496762423788 19437.74 4989.40615206239 0 78
ILMN_2658908 11.8389701555365 4384.615 1458.426 0 36
ILMN_2876071 13.7837814497459 14895.73 4593.5127287983 0 32
ILMN_2696977 13.5106503771691 11874.4 3570.5603156162 0 37
ILMN_2740432 13.424341814088 11405 3190.39191807525 0 34
ILMN_3126986 13.2028667700533 10216.82 2422.917 0 49

Total number of rows: 25697

Table truncated, full table size 1653 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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