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Sample GSM872056 Query DataSets for GSM872056
Status Public on Mar 14, 2012
Title ECC_F2A_59_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 14.1316861494688 20499.45 5149.3815932401 0 38
ILMN_2956159 14.3217164163927 21586.71 5203.98714734918 0 43
ILMN_2704576 13.5369951607971 18655.07 4065.79350250141 0 38
ILMN_3135931 13.8947964597709 19516.57 5837.91630582901 0 46
ILMN_2516699 14.4496762423788 22728.22 6632.32571133234 0 53
ILMN_2964873 13.61103989448 18786.4 2715.97171806575 0 37
ILMN_1377920 13.9370770625561 19525.19 3609.76323848762 0 106
ILMN_2747959 12.2789096415766 11715.29 1955.06592341537 0 41
ILMN_2666018 12.4849028623369 12811.41 2585.54706662559 0 45
ILMN_2851231 14.1981373709814 21322.9 5661.59631063414 0 37
ILMN_2948086 13.7532623321719 19059.78 4576.28123099444 0 37
ILMN_2675747 14.0772940094986 20100.97 4628.81512303888 0 59
ILMN_1258988 11.0061271660218 5065.262 1143.21316103884 0 41
ILMN_2876066 13.8206889427679 19256.06 4747.05673230659 0 51
ILMN_2588052 13.8538136213455 19392.35 3238.51229490697 0 79
ILMN_2658908 11.6099750491635 7559.758 2145.4069 0 49
ILMN_2876071 12.9082577234049 15301.47 3053.38639137413 0 35
ILMN_2696977 13.9824632190025 19621.91 4845.51378678877 0 40
ILMN_2740432 13.5848431628886 18781.18 4517.79050148021 0 61
ILMN_3126986 13.2638966003845 17070.21 3855.93342506714 0 38

Total number of rows: 25697

Table truncated, full table size 1651 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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