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Sample GSM872064 Query DataSets for GSM872064
Status Public on Mar 14, 2012
Title ECC_F2D_41_M
Sample type RNA
 
Source name Primary aortic endothelial cells from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: primary aortic endothelial cells
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Endothelial cells were prepared from mouse aortic rings grown on matrigel wells in endothelial cell media. After 10-14 days cultures were treated with dispase and and passaged to a second plate.
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 13.1060822813177 19456.55 4193.32026122999 0 41
ILMN_2956159 14.3217164163927 26311.23 6440.1369944783 0 37
ILMN_2704576 12.9559107990732 18508.85 4714.04079711129 0 29
ILMN_3135931 14.0772940094986 25173.68 6512.32113742535 0 37
ILMN_2516699 14.0303542221077 25015.63 5541.2239526669 0 35
ILMN_2964873 14.1316861494688 25264.19 5159.45732792796 0 38
ILMN_1377920 14.4496762423788 26868.4 5765.42889197881 0 119
ILMN_2747959 11.8006409815934 9851.504 1922.23551486153 0 26
ILMN_2666018 13.8947964597709 24451.63 5849.95939308113 0 37
ILMN_2851231 14.2617429273087 25587.82 4882.87904475571 0 35
ILMN_2948086 13.3818472839267 21542.37 3703.21246077375 0 30
ILMN_2675747 13.3213665215877 21072.77 4141.2943497124 0 51
ILMN_1258988 11.618307279503 8850.011 2051.1191901011 0 41
ILMN_2876066 13.9824632190025 24863.5 7963.99983327505 0 45
ILMN_2588052 13.8538136213455 24447.9 5647.71738921841 0 80
ILMN_2658908 13.8206889427679 24170.51 6350.06779664218 0 32
ILMN_2876071 13.3602548714397 21428.92 7435.2737256943 0 40
ILMN_2696977 13.6909941243974 23865.46 5826.44631831615 0 34
ILMN_2740432 13.5106503771691 22117.16 3642.39780226729 0 35
ILMN_3126986 13.61103989448 23368.85 4198.20313921868 0 40

Total number of rows: 25697

Table truncated, full table size 1645 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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