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Sample GSM872068 Query DataSets for GSM872068
Status Public on Mar 14, 2012
Title BMM_F2A_1_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.5340779429865 1.579526 15.9240390554668 0.358396 32
ILMN_2956159 13.6651114672082 14129.24 3184.89986599383 0 30
ILMN_2704576 3.78790996878113 -7.774356 13.996932 0.9398496 36
ILMN_3135931 13.7837814497459 14857.15 2952.61807387267 0 38
ILMN_2516699 13.61103989448 13621.68 3901.98838243568 0 46
ILMN_2964873 14.1981373709814 19726.47 3866.30886129864 0 39
ILMN_1377920 13.7224347345669 14449.63 4504.65619802598 0 127
ILMN_2747959 10.1639170855435 1036.629 566.889182062024 0 33
ILMN_2666018 4.30824778307195 -1.341678 18.6549750281798 0.6240602 51
ILMN_2851231 13.1060822813177 8767.815 2396.778 0 36
ILMN_2948086 12.2789096415766 4878.996 1287.95386348874 0 41
ILMN_2675747 12.8638313026327 7139.754 1645.01887691449 0 38
ILMN_1258988 10.0350905983057 938.5128 327.453009124234 0 53
ILMN_2876066 14.3217164163927 23559.28 3604.72601623133 0 42
ILMN_2588052 14.1316861494688 19289.75 5469.91058223824 0 92
ILMN_2658908 4.87695269885453 5.849713 23.6657321648307 0.09022556 39
ILMN_2876071 14.0303542221077 18861.08 5700.9037449079 0 46
ILMN_2696977 13.4669907339079 12980.32 3833.29856806682 0 26
ILMN_2740432 11.9541778881108 3842.557 1557.48183090847 0 40
ILMN_3126986 13.3006311488776 10689.33 3175.17337018493 0 48

Total number of rows: 25697

Table truncated, full table size 1654 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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