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Sample GSM872069 Query DataSets for GSM872069
Status Public on Mar 14, 2012
Title BMM_F2A_2_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.43401101047575 0.04105594 13.6377024412078 0.462406 44
ILMN_2956159 13.4881878545018 10993.45 2827.59642034466 0 42
ILMN_2704576 4.60852166158936 2.149111 19.1142152536499 0.3120301 39
ILMN_3135931 13.5619268851235 11755.09 2205.00132826349 0 47
ILMN_2516699 13.4026755394071 10390.9 2705.7492 0 49
ILMN_2964873 13.3602548714397 9963.96 1584.08733777453 0 40
ILMN_1377920 13.3403776106269 9777.399 2692.96120780289 0 120
ILMN_2747959 9.40803272969531 515.4398 154.273274490981 0 33
ILMN_2666018 4.55547636574061 1.518648 20.0016110753893 0.358396 34
ILMN_2851231 11.8556553041445 3122.977 894.298662832322 0 38
ILMN_2948086 11.0144212420618 1704.107 405.427863712054 0 53
ILMN_2675747 12.5073897372045 5238.216 959.952066373796 0 47
ILMN_1258988 10.0895929746412 858.4006 264.811348797254 0 57
ILMN_2876066 14.4496762423788 25905.99 6041.1438480419 0 43
ILMN_2588052 13.6909941243974 12926.46 3267.00279974051 0 71
ILMN_2658908 4.43953461187201 0.1181433 22.74021721647 0.4573935 39
ILMN_2876071 14.1981373709814 21238.77 5338.66487033308 0 48
ILMN_2696977 13.5106503771691 11167.49 2490.03054525908 0 37
ILMN_2740432 11.8663147660073 3138.623 1234.50466386793 0 48
ILMN_3126986 13.1439082742342 8455.241 2148.5591588523 0 43

Total number of rows: 25697

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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