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Sample GSM872080 Query DataSets for GSM872080
Status Public on Mar 14, 2012
Title BMM_F2A_13_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.15604149804869 -3.167664 11.7435787182028 0.7456141 57
ILMN_2956159 13.5369951607971 15744.22 3529.77574001359 0 45
ILMN_2704576 4.66276135537926 2.95927 16.961988524603 0.2330827 43
ILMN_3135931 13.5106503771691 15511.58 1988.6064 0 36
ILMN_2516699 13.5848431628886 16340.49 3170.4876 0 36
ILMN_2964873 13.9370770625561 20539.69 3284.7385694218 0 51
ILMN_1377920 13.7532623321719 18325.91 4143.72169450719 0 142
ILMN_2747959 6.7117773972361 90.21228 43.8319906146527 0 30
ILMN_2666018 4.71312488126693 3.706374 13.4556061113358 0.179198 56
ILMN_2851231 12.925453261691 9889.699 2300.70101125633 0 31
ILMN_2948086 12.644207019129 7581.365 1968.31718902474 0 41
ILMN_2675747 12.6073688040509 7413.495 1263.32929278174 0 40
ILMN_1258988 10.9364297091174 2436.291 589.926376009837 0 40
ILMN_2876066 14.3217164163927 26655.21 5140.84873277575 0 50
ILMN_2588052 14.0772940094986 23692.22 4318.96387473418 0 79
ILMN_2658908 4.87489721298572 6.278747 19.973677729696 0.08646616 33
ILMN_2876071 13.9824632190025 21380.28 3093.28802106169 0 39
ILMN_2696977 13.4669907339079 14595.52 3010.2134655132 0 52
ILMN_2740432 12.819512360874 9081.934 3491.14456396275 0 54
ILMN_3126986 13.1630855393705 11679.41 2021.32661546856 0 40

Total number of rows: 25697

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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