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Sample GSM872082 Query DataSets for GSM872082
Status Public on Mar 14, 2012
Title BMM_F2A_15_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.48538645049297 0.5664752 14.33712 0.406015 36
ILMN_2956159 13.1439082742342 8308.544 1760.59632451971 0 32
ILMN_2704576 4.80259170184363 3.804753 14.1141369596316 0.1528822 40
ILMN_3135931 13.61103989448 12109.17 1781.78749751557 0 38
ILMN_2516699 13.3403776106269 9686.392 1537.01197506322 0 31
ILMN_2964873 13.2799227727492 9321.241 1398.07512288472 0 32
ILMN_1377920 13.5369951607971 11610.72 2392.39094612025 0 134
ILMN_2747959 8.34512824484192 225.0077 53.4063228414913 0 24
ILMN_2666018 4.50271764773184 0.7447894 13.8882601776199 0.3859649 44
ILMN_2851231 12.1887670594482 4332.673 837.827228309632 0 33
ILMN_2948086 11.8897676646074 3311.545 661.718578644245 0 34
ILMN_2675747 12.6322202277852 5788.479 1050.72693440562 0 51
ILMN_1258988 10.1398646218884 870.5582 167.31172720754 0 56
ILMN_2876066 14.4496762423788 22977.75 3561.56909471456 0 38
ILMN_2588052 13.9370770625561 15344.88 2395.6345735506 0 55
ILMN_2658908 5.11769512704454 7.482609 21.98727 0.04385965 25
ILMN_2876071 14.1316861494688 18952.04 4112.45511928941 0 51
ILMN_2696977 13.6651114672082 12910.79 2118.11854195895 0 38
ILMN_2740432 12.5442356768257 5351.59 1235.53108751599 0 45
ILMN_3126986 13.4026755394071 10063.83 1603.81503555452 0 43

Total number of rows: 25697

Table truncated, full table size 1662 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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