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Sample GSM872084 Query DataSets for GSM872084
Status Public on Mar 14, 2012
Title BMM_F2A_17_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.37619169050918 -0.2164523 12.2229189683009 0.4661654 51
ILMN_2956159 13.4026755394071 12565.11 2609.07349598551 0 46
ILMN_2704576 4.81927762857757 4.82551 11.9436616279087 0.08897243 42
ILMN_3135931 13.2799227727492 11222.92 2032.22547919273 0 46
ILMN_2516699 13.7532623321719 15504.03 4072.56895774152 0 52
ILMN_2964873 14.0303542221077 20904.31 4733.649155305 0 39
ILMN_1377920 13.8538136213455 16539.63 4186.7443629633 0 125
ILMN_2747959 8.17411368264361 240.2228 81.4861399571976 0 40
ILMN_2666018 4.5251586591132 1.393983 13.6349783424812 0.2969925 47
ILMN_2851231 12.2703650809927 5826.835 1099.22103739409 0 46
ILMN_2948086 12.1553148827774 5293.942 1190.69293471608 0 38
ILMN_2675747 12.3596520368734 6152.846 1440.12207934328 0 52
ILMN_1258988 9.69159265712724 748.6083 190.966881468697 0 58
ILMN_2876066 14.1981373709814 23235.54 4462.20755601785 0 44
ILMN_2588052 14.0772940094986 20939.4 5419.51555578081 0 78
ILMN_2658908 4.68885521747638 3.227239 14.3693053899841 0.1817043 33
ILMN_2876071 14.3217164163927 24029.07 6762.39981243168 0 34
ILMN_2696977 13.3403776106269 11783.81 2851.99010489412 0 46
ILMN_2740432 12.4374580458286 6600.989 2126.32944225492 0 43
ILMN_3126986 13.0539499344965 9313.745 1761.02910556981 0 34

Total number of rows: 25697

Table truncated, full table size 1652 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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