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Sample GSM872087 Query DataSets for GSM872087
Status Public on Mar 14, 2012
Title BMM_F2A_20_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.67972861696434 -6.272563 11.3723000857149 0.9711779 42
ILMN_2956159 13.3006311488776 10097.88 2106.334 0 25
ILMN_2704576 4.6899088463578 2.509508 12.4069126332071 0.2205514 35
ILMN_3135931 13.3602548714397 10321.29 1775.639110989 0 38
ILMN_2516699 13.5848431628886 12102.73 2268.46585673228 0 43
ILMN_2964873 13.3818472839267 10383.97 1749.30610800144 0 35
ILMN_1377920 13.4026755394071 10559.15 2146.91567101878 0 136
ILMN_2747959 7.31698290109483 99.05207 40.0912972457163 0 29
ILMN_2666018 4.77215242049252 3.399278 15.4196300899616 0.1654135 50
ILMN_2851231 11.9974704162178 3198.701 591.887344289189 0 37
ILMN_2948086 11.4973830399134 2328.792 668.962167415403 0 51
ILMN_2675747 12.697441244125 5604.373 1244.83142212933 0 54
ILMN_1258988 11.4858298900605 2317.218 496.083690590983 0 57
ILMN_2876066 14.4496762423788 22134.3 3410.79549332822 0 51
ILMN_2588052 13.6909941243974 12852.08 3107.71984759784 0 79
ILMN_2658908 5.04508058516037 6.478017 16.2098752072197 0.06140351 35
ILMN_2876071 14.2617429273087 18544.55 4607.62131564704 0 46
ILMN_2696977 13.4881878545018 11071.51 1891.5648597279 0 41
ILMN_2740432 12.2703650809927 4074.612 946.69173657321 0 39
ILMN_3126986 12.9559107990732 6887.681 1433.58243175942 0 37

Total number of rows: 25697

Table truncated, full table size 1659 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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