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Sample GSM872097 Query DataSets for GSM872097
Status Public on Mar 14, 2012
Title BMM_F2A_30_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.55157080063187 1.485005 14.1476735681745 0.3333333 34
ILMN_2956159 13.4669907339079 9804.752 1901.33778438667 0 40
ILMN_2704576 5.106123309926 6.728501 16.5157350532018 0.02380952 40
ILMN_3135931 13.424341814088 9512.589 1419.45146047934 0 46
ILMN_2516699 13.4881878545018 10371.91 2046.21106416323 0 39
ILMN_2964873 13.8538136213455 13790.18 2117.03808446226 0 39
ILMN_1377920 13.5369951607971 10446.13 2178.31459424974 0 142
ILMN_2747959 6.15417486115217 28.01962 13.3812240963566 0 34
ILMN_2666018 4.43302946056479 0.373334 9.39241638455414 0.4649123 41
ILMN_2851231 13.3403776106269 8422.325 1274.38065080904 0 32
ILMN_2948086 12.7760592271351 5337.193 1128.00791455766 0 42
ILMN_2675747 12.4246780869717 4146.291 893.84519681654 0 50
ILMN_1258988 11.6051193288202 2196.891 425.368484131191 0 38
ILMN_2876066 14.4496762423788 25294.43 3017.6916 0 36
ILMN_2588052 13.7837814497459 12651.45 2707.9816896488 0 71
ILMN_2658908 5.13991456767461 7.134694 17.7249667135406 0.01754386 31
ILMN_2876071 14.1981373709814 19491.6 3313.4275640575 0 44
ILMN_2696977 13.5106503771691 10429.24 1524.98926264776 0 46
ILMN_2740432 12.8638313026327 5782.541 1296.27722822674 0 45
ILMN_3126986 13.6361716421311 11558.82 1327.43874698534 0 38

Total number of rows: 25697

Table truncated, full table size 1650 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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