NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872102 Query DataSets for GSM872102
Status Public on Mar 14, 2012
Title BMM_F2A_37_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.06787602307103 -5.244972 17.7864673168255 0.8170426 45
ILMN_2956159 13.5369951607971 12282.46 3046.17732744551 0 27
ILMN_2704576 4.65320213846076 2.993809 24.2756741260367 0.2581454 47
ILMN_3135931 13.5106503771691 12172.55 2152.19565927496 0 42
ILMN_2516699 13.9824632190025 18089.83 4128.18540505623 0 37
ILMN_2964873 14.0303542221077 18944.15 3732.49497957214 0 45
ILMN_1377920 13.6909941243974 14781.33 3713.04990163198 0 127
ILMN_2747959 7.13624352890301 101.2576 59.1784470821415 0 46
ILMN_2666018 5.10717258752164 10.13661 20.7999599978708 0.0651629 41
ILMN_2851231 13.4462459706025 11749.42 3397.46374141796 0 46
ILMN_2948086 12.5819476090255 5983.781 1458.1086 0 36
ILMN_2675747 12.5073897372045 5664.192 1276.386 0 36
ILMN_1258988 11.2647686361923 2419.84 801.214906557286 0 40
ILMN_2876066 14.2617429273087 26620.36 5214.2244152599 0 47
ILMN_2588052 14.0772940094986 18964.9 4701.27701711444 0 94
ILMN_2658908 4.53157223020484 1.136639 18.5976610177032 0.3759398 38
ILMN_2876071 13.9370770625561 18017.68 3511.95137134454 0 45
ILMN_2696977 13.2226307021588 10221.87 2858.57954547561 0 42
ILMN_2740432 11.7201716280436 3202.756 1046.25455021251 0 38
ILMN_3126986 12.6575805195319 6226.474 1737.43088513122 0 39

Total number of rows: 25697

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap