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Sample GSM872110 Query DataSets for GSM872110
Status Public on Mar 14, 2012
Title BMM_F2A_45_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.92872712676674 6.835742 14.8626713382616 0.04887218 56
ILMN_2956159 13.6651114672082 13246.22 2329.2084 0 36
ILMN_2704576 5.04555267265459 8.776404 15.6447995137042 0.02756892 40
ILMN_3135931 13.6361716421311 13124.68 2027.11178531581 0 44
ILMN_2516699 13.7532623321719 14343.27 3732.66274137721 0 40
ILMN_2964873 14.0772940094986 19731.07 4344.21532459602 0 37
ILMN_1377920 13.4669907339079 11539.88 2972.0326034528 0 140
ILMN_2747959 8.3430857812848 299.634 109.183640934843 0 37
ILMN_2666018 4.89947778220258 6.314826 17.119667610612 0.05764411 44
ILMN_2851231 13.2226307021588 9120.05 2278.49720168662 0 55
ILMN_2948086 12.5700329114737 5830.076 1301.84314563996 0 46
ILMN_2675747 12.5946565335825 6037.674 1477.47994763439 0 47
ILMN_1258988 11.7596921078177 3354.212 868.86111736659 0 48
ILMN_2876066 14.3217164163927 25811.2 5669.82965892715 0 50
ILMN_2588052 13.8538136213455 15666.38 3435.82308787884 0 87
ILMN_2658908 5.10686470189194 9.988509 19.7571009898656 0.01503759 38
ILMN_2876071 14.0303542221077 19496.7 5118.91861539563 0 34
ILMN_2696977 13.5619268851235 11977.33 2844.17448455729 0 34
ILMN_2740432 12.987350927516 8321.355 3142.16177091825 0 47
ILMN_3126986 13.2028667700533 8896.135 1654.2074473705 0 41

Total number of rows: 25697

Table truncated, full table size 1651 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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