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Sample GSM872113 Query DataSets for GSM872113
Status Public on Mar 14, 2012
Title BMM_F2A_48_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.42526581827077 -0.2282845 15.3831976882019 0.4711779 47
ILMN_2956159 13.5848431628886 12256.25 3280.57854278802 0 31
ILMN_2704576 4.54484732088497 1.151163 19.172186294096 0.3471178 43
ILMN_3135931 13.8206889427679 13447.44 2647.20933145192 0 59
ILMN_2516699 13.61103989448 12515.18 4254.94391509515 0 42
ILMN_2964873 14.0772940094986 17631.66 3461.00646781842 0 41
ILMN_1377920 13.5619268851235 12222 3921.61901979024 0 140
ILMN_2747959 5.00135094793826 7.232943 14.6577909269908 0.08145364 39
ILMN_2666018 4.56079836497638 1.355185 13.2841025105806 0.3270677 37
ILMN_2851231 13.3602548714397 8930.129 2186.13581965388 0 34
ILMN_2948086 12.319378618536 4580.748 1121.62441363676 0 34
ILMN_2675747 12.6575805195319 6085.225 1944.70001434463 0 38
ILMN_1258988 11.5803841681842 2791.269 1086.14270626845 0 51
ILMN_2876066 14.3217164163927 22179.06 6706.38582452967 0 58
ILMN_2588052 13.9824632190025 15855.72 4493.34594375326 0 96
ILMN_2658908 4.40725073111397 -0.4732797 19.957326 0.4887218 36
ILMN_2876071 14.1316861494688 17860.29 6212.12904457104 0 52
ILMN_2696977 13.5106503771691 11015.3 3328.62390328057 0 38
ILMN_2740432 12.2893475328879 4395.683 2455.35703154633 0 44
ILMN_3126986 13.2638966003845 8156.678 3470.84371518447 0 38

Total number of rows: 25697

Table truncated, full table size 1663 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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