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Sample GSM872115 Query DataSets for GSM872115
Status Public on Mar 14, 2012
Title BMM_F2A_50_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 5.48406477829013 19.12477 25.3695906655744 0.005012531 48
ILMN_2956159 13.6651114672082 12892.79 2952.4418378082 0 46
ILMN_2704576 5.41944811658307 17.53865 22.4728095476367 0.01002506 46
ILMN_3135931 13.61103989448 12412.63 2410.44458878622 0 35
ILMN_2516699 13.7532623321719 14833.31 3061.68415070995 0 34
ILMN_2964873 14.1316861494688 20923.6 4001.15329324481 0 55
ILMN_1377920 13.8538136213455 15044.49 3916.36728093279 0 127
ILMN_2747959 8.96117588962306 458.956 196.775025469665 0 35
ILMN_2666018 5.61827253736543 22.73099 23.7983804837288 0.001253133 43
ILMN_2851231 13.3403776106269 10273.62 2391.19758830186 0 44
ILMN_2948086 12.6714769690571 6031.17 1274.64817132335 0 41
ILMN_2675747 12.790033671571 6751.938 1711.4364 0 36
ILMN_1258988 11.2867869810848 2434.239 706.036498369584 0 60
ILMN_2876066 14.2617429273087 25150.23 4884.3814722538 0 45
ILMN_2588052 13.9824632190025 17873.46 3935.94027040299 0 80
ILMN_2658908 4.64242396869642 3.505795 24.8376671629201 0.2205514 40
ILMN_2876071 14.0303542221077 19192.68 3976.34970464254 0 38
ILMN_2696977 13.4462459706025 11333.91 2209.39353593924 0 41
ILMN_2740432 12.3921328732702 4884.599 1339.69541703245 0 31
ILMN_3126986 12.9559107990732 7468.039 1831.14050961607 0 52

Total number of rows: 25697

Table truncated, full table size 1662 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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