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Sample GSM872117 Query DataSets for GSM872117
Status Public on Mar 14, 2012
Title BMM_F2A_52_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.95469767544502 -5.418414 11.8286299014038 0.8984963 47
ILMN_2956159 13.6651114672082 13507.78 2944.43594162576 0 40
ILMN_2704576 4.69764752731901 3.466859 14.7804213210056 0.2005012 41
ILMN_3135931 13.5619268851235 12503.71 2083.25483587344 0 42
ILMN_2516699 13.7837814497459 14969.11 3635.44148677143 0 42
ILMN_2964873 14.0303542221077 20058.72 3685.94338147108 0 47
ILMN_1377920 13.6361716421311 13306.81 3450.25441426064 0 133
ILMN_2747959 7.24388192331986 121.1798 51.7134904500062 0 45
ILMN_2666018 4.24443026784215 -2.209433 13.6700855847796 0.6842105 42
ILMN_2851231 13.1257171971427 9261.197 2472.87402069737 0 35
ILMN_2948086 12.619520849011 6288.688 1721.89544727394 0 48
ILMN_2675747 12.5946565335825 6231.584 1177.24444981035 0 48
ILMN_1258988 11.3085342985366 2489.323 724.581691299028 0 44
ILMN_2876066 14.2617429273087 25383.03 4079.14620437822 0 52
ILMN_2588052 13.8538136213455 16365.47 3267.0072366289 0 90
ILMN_2658908 4.80031951805642 4.892552 19.9641674893071 0.1428571 43
ILMN_2876071 14.1316861494688 23174.49 6055.00363585147 0 51
ILMN_2696977 13.424341814088 11085.82 2240.99072407313 0 38
ILMN_2740432 12.804187807043 7286.225 2465.97895976426 0 47
ILMN_3126986 12.8929719977148 7738.363 1360.40364301624 0 34

Total number of rows: 25697

Table truncated, full table size 1650 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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