NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872119 Query DataSets for GSM872119
Status Public on Mar 14, 2012
Title BMM_F2A_54_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.59485432589136 2.225683 11.8924029402235 0.2669173 37
ILMN_2956159 13.6361716421311 13982.09 2817.30435604152 0 42
ILMN_2704576 5.05835111373503 9.982641 17.5745876662148 0.03132832 29
ILMN_3135931 13.6909941243974 14401.6 2201.39691897507 0 55
ILMN_2516699 13.61103989448 13909.12 2573.32254772664 0 35
ILMN_2964873 14.1316861494688 19826.53 2628.94072205318 0 38
ILMN_1377920 13.5369951607971 13221.45 2540.33251668824 0 119
ILMN_2747959 7.70118979346155 198.1765 50.1701469048273 0 39
ILMN_2666018 4.57440640212221 1.958342 14.5512206532648 0.2894737 40
ILMN_2851231 13.2028667700533 10207.13 1412.34717232996 0 42
ILMN_2948086 12.5197507026201 6196.322 1113.26691028588 0 34
ILMN_2675747 12.3596520368734 5629.819 1308.84743766972 0 51
ILMN_1258988 11.0940038655482 2495.756 340.877016616264 0 50
ILMN_2876066 14.4496762423788 27831.8 3982.08387990704 0 48
ILMN_2588052 13.7837814497459 15809.33 3285.91436799462 0 101
ILMN_2658908 4.53421056535207 1.41099 17.6316838658093 0.3258145 40
ILMN_2876071 14.1981373709814 22466.24 4093.82413037709 0 39
ILMN_2696977 13.5106503771691 12605.39 2429.80672498407 0 38
ILMN_2740432 12.7617823937971 7851.52 1966.35161165723 0 51
ILMN_3126986 13.4026755394071 11303.38 1913.3123167613 0 42

Total number of rows: 25697

Table truncated, full table size 1648 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap