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Sample GSM872129 Query DataSets for GSM872129
Status Public on Mar 14, 2012
Title BMM_F2D_7_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.19580615498186 -2.874629 14.3793817074652 0.7431078 54
ILMN_2956159 13.5369951607971 14350.92 2528.58473879257 0 30
ILMN_2704576 4.60893143747281 2.033135 13.5204188277706 0.2944862 46
ILMN_3135931 13.6361716421311 15113.83 2741.9001245664 0 31
ILMN_2516699 13.5619268851235 14423.31 2143.41351250133 0 33
ILMN_2964873 14.0303542221077 18644.33 3915.25090488037 0 33
ILMN_1377920 13.61103989448 14734.92 3517.10817952426 0 126
ILMN_2747959 5.81503786628698 29.33651 22.9812252820229 0 43
ILMN_2666018 4.2922296396095 -1.777869 14.1370853180948 0.6478696 52
ILMN_2851231 12.4374580458286 5981.362 1408.6146 0 36
ILMN_2948086 11.9974704162178 4497.131 1170.75104075632 0 50
ILMN_2675747 12.9417732258916 8459.931 1352.34467086855 0 54
ILMN_1258988 10.9632466442584 2151.172 566.275904639614 0 54
ILMN_2876066 14.4496762423788 26295.83 5685.30112321002 0 47
ILMN_2588052 14.0772940094986 18765.14 3858.18116060525 0 83
ILMN_2658908 4.83045338988826 5.09052 18.2402379436577 0.1240602 34
ILMN_2876071 14.1981373709814 20480.56 4568.11769585877 0 50
ILMN_2696977 13.3818472839267 12478.4 2628.30842664427 0 52
ILMN_2740432 12.644207019129 6703.139 2464.64335197312 0 51
ILMN_3126986 13.1807706602325 10767.05 1343.01489508479 0 40

Total number of rows: 25697

Table truncated, full table size 1655 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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