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Sample GSM872130 Query DataSets for GSM872130
Status Public on Mar 14, 2012
Title BMM_F2D_8_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.14593577573228 -2.861914 10.7345369270562 0.7681704 37
ILMN_2956159 13.5106503771691 11010.03 1816.08258847476 0 30
ILMN_2704576 4.47140870785759 0.3011417 10.9546964340778 0.4473684 37
ILMN_3135931 13.6651114672082 11714.7 1543.98562220264 0 43
ILMN_2516699 13.61103989448 11533.06 1965.56285709628 0 38
ILMN_2964873 13.4026755394071 9856.605 1795.67284005725 0 38
ILMN_1377920 13.3602548714397 9642.281 1892.07596702035 0 129
ILMN_2747959 6.95886425584066 70.89328 32.8848207200077 0 42
ILMN_2666018 4.85719453022481 4.18548 17.3648206643489 0.1240602 42
ILMN_2851231 12.4727836861635 4827.196 833.979897849822 0 40
ILMN_2948086 11.8778447608319 2934.739 528.96172 0 49
ILMN_2675747 12.6575805195319 5332.391 963.852552492901 0 52
ILMN_1258988 10.4310659790018 1059.53 297.274583377934 0 41
ILMN_2876066 14.4496762423788 24682.97 4234.75077459545 0 44
ILMN_2588052 13.6361716421311 11597.49 2502.75877908745 0 89
ILMN_2658908 4.44758711527621 0.07145881 13.0905213408225 0.4586466 28
ILMN_2876071 14.1981373709814 20049.47 3649.13057296331 0 47
ILMN_2696977 13.4881878545018 10808.12 1715.9043092585 0 33
ILMN_2740432 12.8929719977148 6382.269 1372.04775756881 0 35
ILMN_3126986 13.2226307021588 8767.601 1598.00739043446 0 31

Total number of rows: 25697

Table truncated, full table size 1659 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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