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Sample GSM872131 Query DataSets for GSM872131
Status Public on Mar 14, 2012
Title BMM_F2D_9_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.17296862453931 -2.278645 10.9184806748579 0.7230576 45
ILMN_2956159 13.4669907339079 10211.96 2662.617 0 25
ILMN_2704576 4.58742503938091 1.592647 14.6773190357318 0.3107769 39
ILMN_3135931 13.61103989448 11585.28 2115.28308589568 0 35
ILMN_2516699 13.5848431628886 11543.47 2046.40494150439 0 37
ILMN_2964873 13.3602548714397 9797.195 2155.1815725157 0 45
ILMN_1377920 13.3213665215877 9710.748 2235.91698836094 0 136
ILMN_2747959 8.24079500919072 197.206 69.3541376798277 0 37
ILMN_2666018 4.59813539074468 1.706168 16.5562756025311 0.2982456 47
ILMN_2851231 12.5819476090255 4917.836 1258.1886 0 36
ILMN_2948086 11.8498107898665 2757.644 731.299547444171 0 45
ILMN_2675747 12.7760592271351 5955.609 1022.22934999343 0 53
ILMN_1258988 10.6373543611163 1178.24 307.60515391283 0 59
ILMN_2876066 14.4496762423788 24640.07 5246.93052218641 0 46
ILMN_2588052 13.6909941243974 12105.41 2589.06863069353 0 82
ILMN_2658908 6.05434512398283 25.87848 24.5156070641991 0 32
ILMN_2876071 14.2617429273087 20840.99 6665.09387270412 0 38
ILMN_2696977 13.4881878545018 10314.45 2316.07726948395 0 41
ILMN_2740432 12.8490849475816 6272.304 1397.85917704101 0 44
ILMN_3126986 12.8790143649067 6294.377 1130.8032 0 36

Total number of rows: 25697

Table truncated, full table size 1654 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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