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Sample GSM872132 Query DataSets for GSM872132
Status Public on Mar 14, 2012
Title BMM_F2D_10_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.41902773872819 -0.07517875 15.6502210289043 0.4786967 39
ILMN_2956159 13.424341814088 12120.69 2927.08680732441 0 42
ILMN_2704576 4.65726558510548 2.575139 14.462973 0.2255639 49
ILMN_3135931 13.7224347345669 14414 2676.86218703149 0 39
ILMN_2516699 13.5848431628886 13204.28 2942.5776287347 0 34
ILMN_2964873 13.3818472839267 10881.7 2090.6975413251 0 41
ILMN_1377920 13.3006311488776 10184.8 2628.8403465566 0 136
ILMN_2747959 7.49635804686996 135.516 52.3587799027059 0 40
ILMN_2666018 5.07403609234374 7.869024 14.9232759614802 0.03258145 46
ILMN_2851231 12.4612578608207 5445.506 1295.80665505352 0 41
ILMN_2948086 11.6314199886175 2907.059 713.949255546107 0 44
ILMN_2675747 12.7481092613436 6632.107 1661.35472796267 0 42
ILMN_1258988 10.0911202275281 1017.587 243.702072335612 0 45
ILMN_2876066 14.4496762423788 25610.91 5783.36852000692 0 47
ILMN_2588052 13.6909941243974 13959.24 3331.66242705079 0 93
ILMN_2658908 4.55780503024935 1.429597 14.509632 0.3295739 36
ILMN_2876071 14.1981373709814 21745.8 5189.61269616286 0 39
ILMN_2696977 13.5106503771691 12664.46 2374.89724033877 0 42
ILMN_2740432 12.8490849475816 7181.039 2351.77577657871 0 40
ILMN_3126986 13.2638966003845 9865.364 1642.79862227037 0 56

Total number of rows: 25697

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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