NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Sample GSM872134 Query DataSets for GSM872134
Status Public on Mar 14, 2012
Title BMM_F2D_12_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.19228330722093 -2.608027 13.040797665595 0.7142857 43
ILMN_2956159 13.3818472839267 11482.55 1776.03724212993 0 33
ILMN_2704576 4.59640177193076 1.65389 15.9914639218218 0.2769423 48
ILMN_3135931 13.4462459706025 12443.44 1642.16429775349 0 45
ILMN_2516699 13.7224347345669 13906.73 2323.96913767587 0 33
ILMN_2964873 13.8538136213455 15881.22 1995.80003856422 0 41
ILMN_1377920 13.6909941243974 13903.44 2617.65968263855 0 116
ILMN_2747959 7.26325176188696 103.7992 31.6021289738851 0 37
ILMN_2666018 4.41896117301152 -0.3807205 12.974605 0.481203 49
ILMN_2851231 12.8638313026327 7390.673 1595.75618013221 0 37
ILMN_2948086 12.2893475328879 4703.132 808.068827157935 0 40
ILMN_2675747 12.619520849011 5858.628 1468.98540046568 0 51
ILMN_1258988 9.88836130935003 820.6376 179.726861275232 0 46
ILMN_2876066 14.3217164163927 24411.85 3894.75027987769 0 46
ILMN_2588052 14.0303542221077 16806.24 3765.19250347631 0 95
ILMN_2658908 4.38298181518461 -0.7594131 11.9878357077456 0.5162907 39
ILMN_2876071 14.1981373709814 19465.51 4048.50114191241 0 53
ILMN_2696977 13.2799227727492 10777.14 1567.81863251922 0 43
ILMN_2740432 13.0370662485922 7931.7 2286.71070835356 0 46
ILMN_3126986 13.071800951598 8379.431 1465.09963675529 0 43

Total number of rows: 25697

Table truncated, full table size 1663 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap