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Sample GSM872141 Query DataSets for GSM872141
Status Public on Mar 14, 2012
Title BMM_F2D_21_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.9371379648514 -5.758129 14.330828874017 0.906015 40
ILMN_2956159 13.5848431628886 18309.44 3822.03876894472 0 45
ILMN_2704576 4.66176588137631 3.610672 17.6600468887573 0.20802 53
ILMN_3135931 13.61103989448 18452.73 3072.35064012237 0 47
ILMN_2516699 13.6909941243974 19244.88 4101.33124247097 0 39
ILMN_2964873 13.9370770625561 22279.68 3900.92159292762 0 41
ILMN_1377920 13.5619268851235 18053.51 4218.49499229287 0 117
ILMN_2747959 8.06817724637592 381.7525 118.159028615589 0 41
ILMN_2666018 4.15275393497716 -3.50449 11.780682 0.7481203 36
ILMN_2851231 12.2316868806887 8067.201 2038.977 0 36
ILMN_2948086 11.5085605281295 4653.067 1152.59674544465 0 60
ILMN_2675747 12.4133193053513 8727.04 1751.71865945671 0 45
ILMN_1258988 10.4254997288922 2208.478 767.209815441695 0 43
ILMN_2876066 14.3217164163927 28525.62 6621.15799119459 0 40
ILMN_2588052 14.0303542221077 23452.33 4954.48269411722 0 87
ILMN_2658908 4.64499501800788 3.341557 16.559508 0.216792 36
ILMN_2876071 14.1981373709814 27088.67 6176.835436393 0 42
ILMN_2696977 13.3602548714397 16306.24 3073.197693895 0 31
ILMN_2740432 12.819512360874 10816.59 3442.50137190569 0 54
ILMN_3126986 13.2226307021588 14687.14 2827.28670281851 0 39

Total number of rows: 25697

Table truncated, full table size 1650 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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