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Sample GSM872145 Query DataSets for GSM872145
Status Public on Mar 14, 2012
Title BMM_F2D_25_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.8432229294224 6.172284 16.9396810164889 0.1102757 44
ILMN_2956159 13.424341814088 14503.92 2362.45745856818 0 42
ILMN_2704576 4.67394581558611 3.410573 13.8868022427102 0.2067669 35
ILMN_3135931 13.4026755394071 13994.23 1719.52665960504 0 45
ILMN_2516699 13.5619268851235 15617 2212.0146 0 36
ILMN_2964873 14.0772940094986 20394.53 2530.11977864015 0 47
ILMN_1377920 13.5848431628886 16030.9 2757.52977978387 0 127
ILMN_2747959 9.68693986093396 958.6718 180.08118 0 36
ILMN_2666018 4.58509192182784 2.043096 10.4246320272495 0.2857143 41
ILMN_2851231 12.7617823937971 8690.111 1066.63853726837 0 34
ILMN_2948086 11.9421707444731 4861.074 709.777145870449 0 43
ILMN_2675747 12.3486705320663 6596.617 774.9456 0 36
ILMN_1258988 9.60179830566412 907.0936 187.809682403491 0 50
ILMN_2876066 14.4496762423788 27477.39 3804.3553858626 0 46
ILMN_2588052 13.9824632190025 19972.96 3548.99041120077 0 84
ILMN_2658908 4.33951034218426 -1.185908 15.388722 0.5413534 36
ILMN_2876071 14.2617429273087 24779.62 2406.22589277415 0 37
ILMN_2696977 13.3006311488776 12921.69 2216.31805196722 0 42
ILMN_2740432 12.8490849475816 9216.052 2684.81855723705 0 46
ILMN_3126986 12.987350927516 9725.406 959.167708905111 0 37

Total number of rows: 25697

Table truncated, full table size 1652 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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