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Sample GSM872146 Query DataSets for GSM872146
Status Public on Mar 14, 2012
Title BMM_F2D_26_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.31623546243455 -1.009047 9.73055264038035 0.5689223 37
ILMN_2956159 13.3818472839267 12637.88 2086.42586229717 0 42
ILMN_2704576 4.40737261658633 -0.01670708 10.5616212055354 0.4323308 56
ILMN_3135931 13.4669907339079 13590.68 1148.61997162432 0 34
ILMN_2516699 13.5106503771691 13978.82 2087.41667801717 0 38
ILMN_2964873 13.8206889427679 16860.27 2191.38920527055 0 30
ILMN_1377920 13.2799227727492 11717.91 2039.53962290047 0 116
ILMN_2747959 10.9261574398739 2155.201 472.807357667932 0 35
ILMN_2666018 4.3374549903906 -0.7755495 11.9687412802269 0.5388471 48
ILMN_2851231 12.2408289352716 5466.307 888.041966638334 0 37
ILMN_2948086 11.6011612131514 3510.225 613.0218 0 36
ILMN_2675747 12.4246780869717 6018.585 1138.8010944804 0 54
ILMN_1258988 9.97157333210513 1008.078 223.097295721983 0 51
ILMN_2876066 14.4496762423788 26985.68 3565.66384299071 0 58
ILMN_2588052 13.6909941243974 16248.35 2977.20355396821 0 94
ILMN_2658908 4.76110940845531 4.208097 17.0109065017721 0.1365915 31
ILMN_2876071 14.1981373709814 23359.21 4765.54721709317 0 42
ILMN_2696977 13.4026755394071 12893.43 2141.2746 0 36
ILMN_2740432 12.790033671571 7993.509 1759.16909866384 0 39
ILMN_3126986 13.2028667700533 11612.76 1345.2792 0 36

Total number of rows: 25697

Table truncated, full table size 1660 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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