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Sample GSM872148 Query DataSets for GSM872148
Status Public on Mar 14, 2012
Title BMM_F2D_40_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.59076906516943 2.221188 22.1862635261017 0.3107769 30
ILMN_2956159 13.4881878545018 12314.11 3522.90657825722 0 31
ILMN_2704576 4.78007737047755 4.883961 24.6717404841258 0.1654135 50
ILMN_3135931 13.5619268851235 12940.31 2625.81974694685 0 46
ILMN_2516699 13.6909941243974 14104.75 3647.88443580646 0 39
ILMN_2964873 14.0772940094986 19354.43 3136.5468 0 36
ILMN_1377920 13.8206889427679 14952.6 4270.95097989629 0 128
ILMN_2747959 7.65591373325695 148.0757 61.9991810355185 0 30
ILMN_2666018 5.51858856986587 17.00829 17.194322715287 0.007518797 35
ILMN_2851231 13.4026755394071 11379.43 3180.32536272835 0 38
ILMN_2948086 12.6714769690571 6126.347 1575.04099530988 0 43
ILMN_2675747 12.619520849011 5837.126 1595.0557 0 49
ILMN_1258988 11.4614038950188 2738.054 816.868306658882 0 55
ILMN_2876066 14.2617429273087 21894.83 4908.08009149546 0 42
ILMN_2588052 13.9824632190025 17463.61 3796.88853396739 0 93
ILMN_2658908 7.11043409986481 92.37204 47.726360533092 0 39
ILMN_2876071 13.9370770625561 17244.37 5934.88863585493 0 32
ILMN_2696977 13.1060822813177 9471.697 1910.59491451825 0 28
ILMN_2740432 11.8445301318748 3557.285 1350.74911654758 0 52
ILMN_3126986 12.7099232003398 6347.621 1310.0753328955 0 45

Total number of rows: 25697

Table truncated, full table size 1664 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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