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Sample GSM872152 Query DataSets for GSM872152
Status Public on Mar 14, 2012
Title BMM_F2D_44_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.2310020624429 -2.31475 16.2524017483325 0.6729323 33
ILMN_2956159 13.5106503771691 12627.99 2649.9871849863 0 42
ILMN_2704576 4.27455955999643 -1.8217 14.8050084359221 0.6240602 44
ILMN_3135931 13.5619268851235 12973.99 2251.917 0 36
ILMN_2516699 13.6909941243974 14274.72 3358.24130552855 0 32
ILMN_2964873 14.1316861494688 20600.84 3812.96725153128 0 50
ILMN_1377920 13.7532623321719 14891.11 3994.95487941147 0 150
ILMN_2747959 6.54895444266763 59.57553 28.3788755222427 0 34
ILMN_2666018 4.2403703161069 -2.206355 12.1495050840555 0.6629072 51
ILMN_2851231 13.424341814088 11570.04 2666.74584025059 0 38
ILMN_2948086 12.5946565335825 6067.945 1041.59671899187 0 38
ILMN_2675747 12.4849028623369 5707.537 1196.14650337049 0 56
ILMN_1258988 12.1318718087922 4400.305 829.843402245412 0 44
ILMN_2876066 14.2617429273087 25053.67 4414.59354979945 0 57
ILMN_2588052 13.8947964597709 17067.45 4218.04820413942 0 79
ILMN_2658908 4.80031951805642 4.719944 18.420312 0.1478697 36
ILMN_2876071 14.0303542221077 20511.62 3710.1785 0 49
ILMN_2696977 13.4026755394071 11209.43 2610.37412937977 0 45
ILMN_2740432 12.7357941752873 6693.698 2302.8992942794 0 54
ILMN_3126986 12.9559107990732 8000.371 1472.79098297507 0 53

Total number of rows: 25697

Table truncated, full table size 1658 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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