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Sample GSM872158 Query DataSets for GSM872158
Status Public on Mar 14, 2012
Title BMM_F2D_50_M
Sample type RNA
 
Source name Bone marrow derived macrophages from male DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: male
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.41751264257047 -0.01655028 15.2290984925388 0.4749373 38
ILMN_2956159 13.3006311488776 10119.26 2635.5486 0 36
ILMN_2704576 4.88367429307111 5.676344 17.5289393678568 0.1102757 45
ILMN_3135931 13.5848431628886 13273.39 2422.39100859275 0 39
ILMN_2516699 13.4881878545018 12073.28 3884.31288262171 0 44
ILMN_2964873 13.8538136213455 16043.71 4276.61987431558 0 46
ILMN_1377920 13.424341814088 11451.05 3407.00966560986 0 124
ILMN_2747959 7.65369152718442 157.4508 92.3014611860863 0 34
ILMN_2666018 4.73952439873778 3.858331 17.4985530864903 0.1804511 39
ILMN_2851231 12.972348249064 8281.004 1764.75751397821 0 46
ILMN_2948086 12.1398933636792 4272.882 959.439929373872 0 46
ILMN_2675747 12.3382577138724 4952.229 1072.56218627664 0 43
ILMN_1258988 9.80549768337624 861.72 281.474251387949 0 44
ILMN_2876066 14.3217164163927 21611.8 5269.98776609628 0 43
ILMN_2588052 13.7837814497459 15522.48 4755.22511054321 0 88
ILMN_2658908 4.52053939217318 1.209856 19.432054866986 0.3609022 29
ILMN_2876071 14.1316861494688 20292.02 5812.56420523835 0 54
ILMN_2696977 13.3403776106269 10653.42 3017.5802202331 0 45
ILMN_2740432 12.5442356768257 5728.433 3494.15326667036 0 35
ILMN_3126986 12.8638313026327 7540.493 1824.0912 0 36

Total number of rows: 25697

Table truncated, full table size 1652 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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