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Sample GSM872163 Query DataSets for GSM872163
Status Public on Mar 14, 2012
Title BMM_F2A_126_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 5.02902522929167 29.79602 7.2119513677355 0.02506266 38
ILMN_2956159 13.0180554292709 5283.674 1770.70190498986 0 37
ILMN_2704576 4.74029377663379 26.73567 8.19859243299848 0.141604 45
ILMN_3135931 13.5619268851235 7442.999 1507.00779370493 0 51
ILMN_2516699 13.9824632190025 11220.33 2925.71718760512 0 38
ILMN_2964873 14.0772940094986 11921.51 3024.66158032537 0 38
ILMN_1377920 13.7837814497459 9970.806 3111.89046245269 0 149
ILMN_2747959 8.8234040084893 246.2136 86.2374693234727 0 41
ILMN_2666018 5.11676172887456 30.82255 11.5647420445251 0.01879699 47
ILMN_2851231 13.6361716421311 7975.942 1745.5350131165 0 42
ILMN_2948086 12.925453261691 4985.672 1037.08416291485 0 55
ILMN_2675747 12.6714769690571 3877.403 1078.213390516 0 50
ILMN_1258988 10.6546603915248 920.0636 235.279457680818 0 50
ILMN_2876066 14.1981373709814 12233.06 2272.34428948229 0 37
ILMN_2588052 14.0303542221077 11399.78 3272.02195419134 0 91
ILMN_2658908 5.46402619431605 35.48135 13.1737855451681 0.003759399 45
ILMN_2876071 14.3217164163927 14083.83 3549.2103225592 0 43
ILMN_2696977 12.8490849475816 4667.614 1498.30053328096 0 30
ILMN_2740432 11.5803841681842 1721.086 687.76057177 0 53
ILMN_3126986 12.4612578608207 3314.08 878.136112492818 0 44

Total number of rows: 25697

Table truncated, full table size 1642 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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