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Sample GSM872164 Query DataSets for GSM872164
Status Public on Mar 14, 2012
Title BMM_F2A_127_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 3.90618164649468 21.84958 8.45024427739471 0.8696742 42
ILMN_2956159 13.2226307021588 5925.979 1464.25070876938 0 44
ILMN_2704576 4.4083549992936 24.32045 5.9661610704598 0.4486215 30
ILMN_3135931 13.7532623321719 8659.336 1908.7245 0 25
ILMN_2516699 13.9370770625561 10291.22 2993.74217490311 0 40
ILMN_2964873 14.3217164163927 12716.79 2544.10740762703 0 32
ILMN_1377920 13.8206889427679 9058.448 3086.91673396601 0 126
ILMN_2747959 7.19189968602806 83.20439 33.4429231310223 0 34
ILMN_2666018 5.1931819733803 30.3203 9.97351487446627 0.00877193 50
ILMN_2851231 13.61103989448 7855.83 2376.35891029123 0 50
ILMN_2948086 12.7760592271351 4142.357 1151.36305756824 0 41
ILMN_2675747 12.5946565335825 3396.546 1119.99489203121 0 54
ILMN_1258988 11.0173764829492 1118.687 286.717870994239 0 48
ILMN_2876066 14.2617429273087 12496.09 3173.27542941491 0 40
ILMN_2588052 13.9824632190025 10357.01 3144.27739708582 0 80
ILMN_2658908 4.86051633354188 27.35061 9.37820866640618 0.08897243 31
ILMN_2876071 14.0772940094986 11684.9 2619.5260248475 0 52
ILMN_2696977 13.1060822813177 5431.036 1755.32753047174 0 50
ILMN_2740432 11.7699556883311 1891.299 680.805033481642 0 34
ILMN_3126986 12.7099232003398 3726.435 854.405657612109 0 38

Total number of rows: 25697

Table truncated, full table size 1639 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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