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Sample GSM872166 Query DataSets for GSM872166
Status Public on Mar 14, 2012
Title BMM_F2A_129_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 5.55661714977791 36.72238 13.9651473148576 0.001253133 43
ILMN_2956159 13.2226307021588 5700.415 1584.23376329346 0 33
ILMN_2704576 5.14656404597879 30.91891 9.3457422628834 0.01378446 45
ILMN_3135931 13.61103989448 7918.507 1963.0383523004 0 34
ILMN_2516699 13.6361716421311 8031.401 1720.8093523227 0 28
ILMN_2964873 14.0772940094986 10433.42 2068.95071546636 0 35
ILMN_1377920 13.6909941243974 8197.722 2402.43201801841 0 123
ILMN_2747959 8.08453186644627 158.9879 62.0429344189288 0 35
ILMN_2666018 5.47408063783498 35.43161 11.600641250057 0.002506266 29
ILMN_2851231 13.4881878545018 6751.035 1995.38003440616 0 48
ILMN_2948086 12.8490849475816 4312.05 1201.15243310269 0 33
ILMN_2675747 12.4849028623369 3271.235 843.382121970225 0 59
ILMN_1258988 11.0032722614562 1205.172 387.877325280364 0 39
ILMN_2876066 14.3217164163927 11279.81 2721.30098960758 0 45
ILMN_2588052 14.0303542221077 10013.75 2921.87366728514 0 70
ILMN_2658908 6.4007308855216 55.507 20.0888142717794 0 38
ILMN_2876071 13.9824632190025 9518.979 3407.94525539171 0 32
ILMN_2696977 13.0180554292709 4991.363 1424.34158929942 0 48
ILMN_2740432 11.6912934735946 1914.783 602.697219618674 0 42
ILMN_3126986 12.6575805195319 3779.928 1400.18541433532 0 42

Total number of rows: 25697

Table truncated, full table size 1648 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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