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Sample GSM872171 Query DataSets for GSM872171
Status Public on Mar 14, 2012
Title BMM_F2D_133_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 5.03727113408983 53.65357 20.4950723596704 0.02756892 45
ILMN_2956159 13.1257171971427 11802.59 2728.19565220464 0 30
ILMN_2704576 4.81636714109651 46.96954 16.0749089324662 0.08521304 41
ILMN_3135931 13.7532623321719 15997.02 4062.78149432665 0 39
ILMN_2516699 13.8206889427679 16429.45 4713.6168 0 36
ILMN_2964873 14.4496762423788 21504.72 3772.12147194944 0 22
ILMN_1377920 13.6909941243974 15796.35 4296.5164 0 121
ILMN_2747959 7.92841444708922 380.7632 144.528655903507 0 34
ILMN_2666018 5.17193835279079 58.23532 25.6113373661463 0.01253133 40
ILMN_2851231 13.424341814088 13685.71 3209.00725254741 0 26
ILMN_2948086 12.4727836861635 8124.476 1838.2871830816 0 48
ILMN_2675747 12.1887670594482 6292.988 1721.54661142272 0 46
ILMN_1258988 10.5689951770989 2398.138 497.3991 0 36
ILMN_2876066 14.1316861494688 19223.27 6122.9924 0 49
ILMN_2588052 13.9824632190025 18115.07 4578.15232366173 0 73
ILMN_2658908 5.61795266705573 76.86597 31.5411115229033 0 34
ILMN_2876071 14.3217164163927 19957.1 6121.48966424219 0 31
ILMN_2696977 13.0180554292709 11023.09 2913.28450117326 0 41
ILMN_2740432 11.5387967840143 4334.946 1592.62082475741 0 33
ILMN_3126986 12.8490849475816 9614.271 2349.59081740398 0 32

Total number of rows: 25697

Table truncated, full table size 1643 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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