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Sample GSM872174 Query DataSets for GSM872174
Status Public on Mar 14, 2012
Title BMM_F2A_135_F
Sample type RNA
 
Source name Bone marrow derived macrophages from female DBA/2J x AKR/J F2 mice
Organism Mus musculus
Characteristics gender: female
strain: DBA/2JxAKR/J
cell type: bone marrow derived macrophages (BMM)
Extracted molecule total RNA
Extraction protocol standard as recommended by illumina
Label Cy3
Label protocol standard as recommended by illumina
 
Hybridization protocol standard as recommended by illumina
Scan protocol standard as recommended by illumina
Description Bone marrow was flushed with DMEM and cells were grown for 10-14 days in Bone marrow macrophages complete media
Data processing The data was preprocessed by Bioconductor lumi package (version 2.6.0). It was vst transformed and quantile normalized.
 
Submission date Feb 08, 2012
Last update date Mar 14, 2012
Contact name Jeff Hsu
E-mail(s) hsuj@ccf.org
Phone 2162443723
Organization name Cleveland Clinic Lerner Research Institute
Department Cellular and Molecular Medicine
Lab Smith
Street address 9500 Euclid Ave
City Cleveland
State/province OH
ZIP/Postal code 44195
Country USA
 
Platform ID GPL6885
Series (1)
GSE35676 eQTL study of bone marrow derived macrophages and endothelial cells from DBA2xAKR F2 mice

Data table header descriptions
ID_REF
VALUE normalized signal intensity
RAW_VALUE raw signal intensity
BEAD_STDERR the standard error of the probe measurements
Detection_Pval the detection p-value of the probe
Avg_NBEADS Number of beads for the probe

Data table
ID_REF VALUE RAW_VALUE BEAD_STDERR Detection_Pval Avg_NBEADS
ILMN_2753809 4.72220338295672 41.27319 13.9745048951096 0.1679198 41
ILMN_2956159 13.7532623321719 11935.91 4560.76325521714 0 39
ILMN_2704576 4.66168323341868 40.30786 11.3419378155429 0.20802 42
ILMN_3135931 13.6909941243974 11164.46 3789.3870004134 0 43
ILMN_2516699 13.8947964597709 13081.8 3878.34734394015 0 39
ILMN_2964873 14.3217164163927 17137.47 4659.74392604664 0 33
ILMN_1377920 13.6651114672082 10914.85 3725.36440990063 0 124
ILMN_2747959 6.85547278591476 123.8905 49.8772671997244 0 29
ILMN_2666018 4.58172509886167 39.2341 15.8110225607959 0.2694235 51
ILMN_2851231 13.2419685347263 8288.568 2620.24556046062 0 40
ILMN_2948086 12.3596520368734 4334.114 1348.49476284124 0 41
ILMN_2675747 12.7617823937971 5917.294 2231.08189970523 0 43
ILMN_1258988 11.8279741443177 3262.406 1003.46881994123 0 33
ILMN_2876066 14.1316861494688 15851.81 5190.16942772276 0 52
ILMN_2588052 13.8206889427679 12370.07 3783.32203008232 0 76
ILMN_2658908 4.67440628806732 40.52517 14.2421905260933 0.197995 47
ILMN_2876071 13.9824632190025 14064.05 4432.28112975829 0 46
ILMN_2696977 13.2028667700533 8200.059 2542.32917874512 0 31
ILMN_2740432 11.9541778881108 3534.671 1508.282405289 0 37
ILMN_3126986 13.0370662485922 7323.15 1811.59552142692 0 38

Total number of rows: 25697

Table truncated, full table size 1648 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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